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  David Benaben, Christophe Blanchet, Matéo Boudet, Guillaume Brysbaert, Anthony Bretaudeau, et al.. Services deployed on the IFB National Network of Computing Resources (NNCR). JOBIM 2024 - Journées ouvertes en biologie, informatique, et mathématiques, Jun 2024, Toulouse, France. , 2024. ⟨hal-04618059⟩
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  Julie Lao, Raphael Tackx, Pierre Marin, Amanda Dieuaide, Thomas Mignon, et al.. The ABRomics platform — a One Health Antimicrobial resistance analysis service. Journées Ouvertes en Biologie, Informatique, et Mathématiques - 2024, Jun 2024, Toulouse, France. ⟨hal-04618645⟩
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  Clea Siguret, Thomas Chaussepied, Romane Libouban, Eva Mercier, Julien Seiler, et al.. Galaxy France: an example of a national UseGalaxy server. GCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. pp.1-15, ⟨10.7490/f1000research.1119767.1⟩. ⟨hal-04644627⟩
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  France Denoeud, Olivier Godfroy, Corinne Cruaud, Svenja Heesch, Zofia Nehr, et al.. Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems. Cell, In press, ⟨10.1016/j.cell.2024.10.049⟩. ⟨hal-04794231⟩
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  Fatima Ezzahraa El Houjjaji, Mark Hoebeke. Développement d'outils Web Pour La Valorisation De Données De Biodiversité. Station Biologique de Roscoff; UNIVERSITÉ ABDELMALEK ESSAÂDI. 2023. ⟨hal-04257654⟩
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  Qikun Xing, Léa Cabioch, Antoine Desrut, Gildas Le Corguillé, Sylvie Rousvoal, et al.. Aldehyde perception induces specific molecular responses in Laminaria digitata and affects algal consumption by a specialist grazer. The Plant Journal, In press, ⟨10.1111/tpj.16450⟩. ⟨hal-04197531⟩
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  Anne-Françoise Adam-Blondon, Jacques van Helden, Gildas Le Corguillé, Christophe Blanchet, Hélène Chiapello, et al.. IFB/ELIXIR-FR, the french node of ELIXIR. ISMB ECCB 2023, International Society for Computational Biology, Jul 2023, Lyon, France. ⟨hal-04503051⟩
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  Hugo Doré, Ulysse Guyet, Jade Leconte, Gregory Farrant, Benjamin Alric, et al.. Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies. The International Society of Microbiologial Ecology Journal, 2023, 17 (5), pp.720-732. ⟨10.1038/s41396-023-01386-0⟩. ⟨hal-04238382⟩
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  Julie Lao, Pierre Marin, Romain Dallet, Fabien Mareuil, Alix De Toisy, et al.. ABRomics: An integrated multi-omics platform for antibiotic resistance research and public health. 9ème symposium sur la résistance aux antimicrobiens chez les animaux et dans l'environnement (ARAE 2023), Jul 2023, Vinci International Convention Centre, Tours, France. ⟨hal-04369175⟩
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  Mélanie Pétéra, Yann Guitton, Charlotte Joly, Florence Souard, Etienne A Thévenot, et al.. Technological developments and opportunities with Workflow4Metabolomics. ISMB/ECCB 2023: The 31st Annual Intelligent Systems For Molecular Biology and the 22nd Annual European Conference on Computational Biology, Jul 2023, Lyon, France. ⟨hal-04185176⟩
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  Amandine Thomas, Mark Hoebeke, Erwann Quimbert, Mickaël Tréguer, Alain Lefebvre, et al.. Portail vitrine de l’IR ILICO. MeriGéo 2023 - quatrième édition du colloque national dédié à la géomatique appliquée au milieu marin, Mar 2023, Le Havre, France. . ⟨hal-04059807⟩
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  Mark Stam, Pernelle Lelièvre, Mark Hoebeke, Erwan Corre, Tristan Barbeyron, et al.. SulfAtlas, the sulfatase database: state of the art and new developments. Nucleic Acids Research, 2023, 51 (D1), pp.D647-D653. ⟨10.1093/nar/gkac977⟩. ⟨hal-03948623⟩
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  Stéphane Mauger, Aurélien Baud, Gildas Le Corguillé, Gwenn Tanguy, Erwan Legeay, et al.. Genetic resources of macroalgae: Development of an efficient method using microsatellite markers in non-model organisms. Algal Research - Biomass, Biofuels and Bioproducts, 2023, 75, pp.103251. ⟨10.1016/j.algal.2023.103251⟩. ⟨hal-04206217⟩
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  Hugo Doré, Jade Leconte, Ulysse Guyet, Solène Breton, Gregory Farrant, et al.. Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts. mSystems, 2022, 7 (6), ⟨10.1128/msystems.00656-22⟩. ⟨hal-03971550v2⟩
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  Mark Hoebeke, Jean-Michel Aroumougom. Linux for Beginners. Licence. Station Biologique de Roscoff, France. 2022. ⟨hal-04029594⟩
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  Lain Pavot, Mélanie Pétéra, Nils Paulhe, Yann Guitton, Gildas Le Corguillé, et al.. Update on technological developments and opportunities with Workflow4Metabolomics. Analytics 2022, Sep 2022, Nantes, France. . ⟨hal-03776462⟩
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  Maxime Endress, Céline Zatylny-Gaudin, Jérôme Leprince, Benjamin Lefranc, Erwan Corre, et al.. Structural and functional characterization of orcokinin B-like neuropeptides in the cuttlefish ($Sepia\ officinalis$). Marine drugs, 2022, 20 (8), pp.505. ⟨10.3390/md20080505⟩. ⟨hal-03777035⟩
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  Robert M Waterhouse, Anne-Françoise Adam-Blondon, Donat Agosti, Petr Baldrian, Bachir Balech, et al.. Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR. F1000Research, 2022, 10, ⟨10.12688/f1000research.73825.1⟩. ⟨hal-04012675⟩
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  Mariarita Caracciolo, Fabienne Rigaut-Jalabert, Sarah Romac, Frédéric Mahé, Samuel Forsans, et al.. Seasonal dynamics of marine protist communities in tidally mixed coastal waters. Molecular Ecology, 2022, 31 (14), pp.3761-3783. ⟨10.1111/mec.16539⟩. ⟨hal-03781932⟩
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  Frauke Leitner, Maria Carazo Jose, Johanna Bischof, Natalie Haley, Pauline Audergon, et al.. EOSC-Life D3.2 Report on the work of the initial demonstrators. Instruct-ERIC; CSIC; BSC; CRG; EMBL-HD; INRAE; CNRS; CCMAR; EMBRC ERIC; ALUFR; UNIVDUN; UNITO; ERINHA; CNR; FZJ; UNIMAN; NIB; UNI Bielefeld; Fraunhofer; Diamond; IMG; EATRIS. 2021. ⟨hal-04161943⟩
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  Laurence Garczarek, Ulysse Guyet, Hugo Doré, Gregory Farrant, Mark Hoebeke, et al.. Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes. Nucleic Acids Research, 2021, 49 (D1), pp.D667-D676. ⟨10.1093/nar/gkaa958⟩. ⟨hal-02988562⟩
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  Hugo Doré, Gregory Farrant, Ulysse Guyet, Julie Haguait, Florian Humily, et al.. Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria. Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.567431⟩. ⟨hal-02938656⟩
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  Jean-Philippe Mévy, Béatrice B. Loriod, Xi Liu, Erwan Corre, Magali Torres, et al.. Response of Downy Oak (Quercus pubescens Willd.) to Climate Change: Transcriptome Assembly, Differential Gene Analysis and Targeted Metabolomics. Plants, 2020, 9 (9), pp.1149. ⟨10.3390/plants9091149⟩. ⟨hal-02945417⟩
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  Anna P Muir, Stanislas F Dubois, Rebecca E Ross, Louise B Firth, Antony M Knights, et al.. Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.). BMC Evolutionary Biology, 2020, 20 (1), ⟨10.1186/s12862-020-01658-9⟩. ⟨hal-02935188⟩
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  Huiru Li, Lydia Scheschonk, Sandra Heinrich, Klaus Valentin, Lars Harms, et al.. Transcriptomic Responses to Darkness and the Survival Strategy of the Kelp Saccharina latissima in the Early Polar Night. Frontiers in Marine Science, 2020, 7, pp.592033. ⟨10.3389/fmars.2020.592033⟩. ⟨hal-04012668⟩
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  Simon M. Dittami, Erwan Corre, Loraine Brillet-Guéguen, Agnieszka Lipinska, Noé Pontoizeau, et al.. The genome of Ectocarpus subulatus – A highly stress-tolerant brown alga. Marine Genomics, 2020, 52, pp.100740. ⟨10.1016/j.margen.2020.100740⟩. ⟨hal-02866117⟩
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  Delphine Nègre, Méziane Aite, Arnaud Belcour, Clémence Frioux, Loraine Brillet-Guéguen, et al.. Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus. Antioxidants , 2019, 8 (11), pp.564. ⟨10.3390/antiox8110564⟩. ⟨hal-02395080⟩
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  Emmanuelle Soleilhac, Loraine Brillet-Guéguen, Véronique V. Roussel, Renaud Prudent, Bastien Touquet, et al.. Specific Targeting of Plant and Apicomplexa Parasite Tubulin through Differential Screening Using In Silico and Assay-Based Approaches. International Journal of Molecular Sciences, 2018, 19 (10), pp.3085. ⟨10.3390/ijms19103085⟩. ⟨hal-02106151⟩
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  Xi Liu, Frédéric Hérault, Christian Diot, Erwan Corre. Gene expression analysis of duck liver steatosis from hybrid and parental species. Journées Ouvertes Biologie, Informatique et Mathématiques (Jobim), Jul 2018, Marseille, France. , 2018, Abstracts Jobim 2018. ⟨hal-01842089⟩
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  Maxime Endress, Céline Zatylny-Gaudin, Erwan Corre, Gildas Le Corguille, Louis Benoist, et al.. Crustacean cardioactive peptides Expression, localization, structure, and a possible involvement in regulation of egg-laying in the cuttlefish Sepia officinalis. General and Comparative Endocrinology, 2018, 260, pp.67-79. ⟨10.1016/j.ygcen.2017.12.009⟩. ⟨hal-01744294⟩
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  Svenja Heesch, Ga Youn Cho, Akira F. Peters, Gildas Le Corguillé, Cyril Falentin, et al.. Towards a genetic map for the brown alga Saccorhiza polyschides. German Botanical Society (DBG) meeting, Mar 2018, Berchtesgaden, Germany. ⟨hal-02947599⟩
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  Alexandre Leduc, Céline Zatylny-Gaudin, Marie Robert, Erwan Corre, Gildas Le Corguille, et al.. Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets. BMC Genomics, 2018, 19, pp.396. ⟨10.1186/s12864-018-4780-0⟩. ⟨hal-01973434⟩
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  Gildas Le Corguillé, Franck Giacomoni, Christophe Caron. Workflow4Metabolomics:Towards an international computing infrastructure and a tools showcase for Metabolomics. GCC2017 Galaxy Community Conferences, Jun 2017, Montpellier, France. 2017. ⟨hal-01604843⟩
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  Richard G Dorrell, Gillian Gile, Giselle Mccallum, Raphaël Méheust, Eric P Bapteste, et al.. Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome. eLife, 2017, 6, pp.e23717. ⟨10.7554/eLife.23717⟩. ⟨hal-01526828⟩
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  Tristan Barbeyron, Loraine Brillet-Guéguen, Wilfrid Carré, Cathelène Carrière, Christophe C. Caron, et al.. Matching the Diversity of Sulfated Biomolecules: Creation of a Classification Database for Sulfatases Reflecting Their Substrate Specificity. PLoS ONE, 2016, 11 (10), pp.e0164846. ⟨10.1371/journal.pone.0164846⟩. ⟨hal-01409013⟩
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  Hugo Varet, Loraine Brillet-Guéguen, Jean-Yves Coppée, Marie-Agnès Dillies. SARTools: A DESeq2-and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data. PLoS ONE, 2016, 11 (6), pp.e0157022. ⟨10.1371/journal.pone.0157022⟩. ⟨hal-01344179⟩
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  Dominique Boeuf, Stéphane Audic, Loraine Brillet-Guéguen, Christophe Caron, Christian Jeanthon. MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution. Database - The journal of Biological Databases and Curation, 2015, 2015, pp. bav080. ⟨10.1093/database/bav080⟩. ⟨hal-01218501⟩
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  Pauline Gosselin, Yvan Martineau, Julia Morales, Mirjam Czjzek, Virginie Glippa, et al.. Tracking a refined eIF4E-binding motif reveals Angel1 as a new partner of eIF4E.. Nucleic Acids Research, 2013, 41 (16), pp.7783-92. ⟨10.1093/nar/gkt569⟩. ⟨hal-01002440⟩
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  Jonas Collén, Betina Porcel, Wilfrid Carré, Steven G Ball, Cristian Chaparro, et al.. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (13), pp.5247-52. ⟨10.1073/pnas.1221259110⟩. ⟨hal-01073830⟩
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  Susana M. Coelho, Olivier Godfroy, Alok Arun, Gildas Le Corguillé, Akira F. Peters, et al.. OUROBOROS is a master regulator of the gametophyte to sporophyte life cycle transition in the brown alga Ectocarpus. Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (28), pp.11518-11523. ⟨10.1073/pnas.1102274108⟩. ⟨hal-01806390⟩
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